Detailed information of SNP:
|
SNP ID:
sf1000623540(Gbrowse)
Chromosome: chr10 Position: 623540 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 73.27% | 26.73% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 484 | 33.68% | 66.32% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 322 | 12.73% | 87.27% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000623540 | G->C | LOC_Os10g01984(LOC_Os10g01984.1) | INTRON |