Detailed information of SNP:
|
SNP ID:
sf1000624761(Gbrowse)
Chromosome: chr10 Position: 624761 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 72.49% | 27.51% |
| All Indica | 752 | 66.76% | 33.24% |
| All Japonica | 485 | 76.29% | 23.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 339 | 62.54% | 37.46% |
| Indica II | 203 | 59.11% | 40.89% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 332 | 95.78% | 4.22% |
| Tropical Japonica | 90 | 15.56% | 84.44% |
| Japonica Intermediate | 63 | 60.32% | 39.68% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000624761 | C->T | LOC_Os10g01984(LOC_Os10g01984.1) | INTRON |