Detailed information of SNP:
|
SNP ID:
sf1000626976(Gbrowse)
Chromosome: chr10 Position: 626976 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1142 | 55.34% | 44.66% |
| All Indica | 584 | 34.93% | 65.07% |
| All Japonica | 471 | 82.17% | 17.83% |
| Aus | 46 | 32.61% | 67.39% |
| Indica I | 270 | 26.30% | 73.70% |
| Indica II | 164 | 42.07% | 57.93% |
| Indica Intermediate | 150 | 42.67% | 57.33% |
| Temperate Japonica | 332 | 95.18% | 4.82% |
| Tropical Japonica | 77 | 33.77% | 66.23% |
| Japonica Intermediate | 62 | 72.58% | 27.42% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 31 | 61.29% | 38.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000626976 | T->C | LOC_Os10g01984(LOC_Os10g01984.1) | Synonymous |