Detailed information of SNP:
|
SNP ID:
sf1000627119(Gbrowse)
Chromosome: chr10 Position: 627119 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 91.02% | 8.98% |
| All Indica | 746 | 86.33% | 13.67% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 71.19% | 28.81% |
| Indica I | 340 | 81.76% | 18.24% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 197 | 84.26% | 15.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000627119 | C->T | LOC_Os10g01984(LOC_Os10g01984.1) | Non-Synonymous SNP |