Detailed information of SNP:
|
SNP ID:
sf1000628848(Gbrowse)
Chromosome: chr10 Position: 628848 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 66.07% | 33.93% |
| All Indica | 786 | 88.93% | 11.07% |
| All Japonica | 497 | 27.77% | 72.23% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 368 | 89.67% | 10.33% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000628848 | A->G | INTERGENIC | None |