Detailed information of SNP:
|
SNP ID:
sf1000634585(Gbrowse)
Chromosome: chr10 Position: 634585 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 69.39% | 30.61% |
| All Indica | 772 | 94.17% | 5.83% |
| All Japonica | 493 | 28.19% | 71.81% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 366 | 95.36% | 4.64% |
| Indica II | 205 | 92.68% | 7.32% |
| Indica Intermediate | 201 | 93.53% | 6.47% |
| Temperate Japonica | 333 | 6.31% | 93.69% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000634585 | A->G | LOC_Os10g02010(LOC_Os10g02010.1) | Non-Synonymous SNP |