Detailed information of SNP:
|
SNP ID:
sf1000641167(Gbrowse)
Chromosome: chr10 Position: 641167 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 64.55% | 35.45% |
| All Indica | 785 | 87.01% | 12.99% |
| All Japonica | 492 | 25.41% | 74.59% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 368 | 88.04% | 11.96% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 333 | 14.41% | 85.59% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000641167 | A->G | INTERGENIC | None |