Detailed information of SNP:
|
SNP ID:
sf1000644744(Gbrowse)
Chromosome: chr10 Position: 644744 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 62.49% | 37.51% |
| All Indica | 771 | 86.90% | 13.10% |
| All Japonica | 486 | 20.37% | 79.63% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 362 | 85.64% | 14.36% |
| Indica II | 205 | 86.83% | 13.17% |
| Indica Intermediate | 204 | 89.22% | 10.78% |
| Temperate Japonica | 334 | 4.19% | 95.81% |
| Tropical Japonica | 88 | 70.45% | 29.55% |
| Japonica Intermediate | 64 | 35.94% | 64.06% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000644744 | A->G | INTERGENIC | None |