Detailed information of SNP:
|
SNP ID:
sf1000645037(Gbrowse)
Chromosome: chr10 Position: 645037 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 94.32% | 5.68% |
| All Indica | 790 | 95.44% | 4.56% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000645037 | A->C | LOC_Os10g02030(LOC_Os10g02030.1) | Non-Synonymous SNP |