Detailed information of SNP:
|
SNP ID:
sf1000645134(Gbrowse)
Chromosome: chr10 Position: 645134 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1251 | 73.06% | 26.94% |
| All Indica | 656 | 57.93% | 42.07% |
| All Japonica | 485 | 91.96% | 8.04% |
| Aus | 59 | 88.14% | 11.86% |
| Indica I | 313 | 58.15% | 41.85% |
| Indica II | 174 | 56.32% | 43.68% |
| Indica Intermediate | 169 | 59.17% | 40.83% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 86 | 67.44% | 32.56% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000645134 | T->C | LOC_Os10g02030(LOC_Os10g02030.1) | Non-Synonymous SNP |