Detailed information of SNP:
|
SNP ID:
sf1000646278(Gbrowse)
Chromosome: chr10 Position: 646278 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 83.98% | 16.02% |
| All Indica | 766 | 76.89% | 23.11% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 352 | 65.91% | 34.09% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 202 | 77.23% | 22.77% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000646278 | A->G | LOC_Os10g02030(LOC_Os10g02030.1) | Non-Synonymous SNP |