Detailed information of SNP:
|
SNP ID:
sf1000646581(Gbrowse)
Chromosome: chr10 Position: 646581 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 92.27% | 7.73% |
| All Indica | 779 | 92.94% | 7.06% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 94.48% | 5.52% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000646581 | A->G | LOC_Os10g02030(LOC_Os10g02030.1) | Non-Synonymous SNP |