Detailed information of SNP:
|
SNP ID:
sf1000649492(Gbrowse)
Chromosome: chr10 Position: 649492 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 68.46% | 31.54% |
| All Indica | 794 | 92.70% | 7.30% |
| All Japonica | 496 | 26.61% | 73.39% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 334 | 5.39% | 94.61% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000649492 | T->C | LOC_Os10g02030(LOC_Os10g02030.1) | INTRON |