Detailed information of SNP:
|
SNP ID:
sf1000650689(Gbrowse)
Chromosome: chr10 Position: 650689 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 72.29% | 27.71% |
| All Indica | 786 | 97.71% | 2.29% |
| All Japonica | 496 | 28.63% | 71.37% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 97.56% | 2.44% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000650689 | A->G | INTERGENIC | None |