Detailed information of SNP:
|
SNP ID:
sf1000660340(Gbrowse)
Chromosome: chr10 Position: 660340 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 57.16% | 42.84% |
| All Indica | 775 | 51.87% | 48.13% |
| All Japonica | 487 | 66.32% | 33.68% |
| Aus | 29 | 34.48% | 65.52% |
| Indica I | 363 | 53.99% | 46.01% |
| Indica II | 207 | 30.92% | 69.08% |
| Indica Intermediate | 205 | 69.27% | 30.73% |
| Temperate Japonica | 334 | 84.43% | 15.57% |
| Tropical Japonica | 86 | 9.30% | 90.70% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 9 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000660340 | A->G | INTERGENIC | None |