Detailed information of SNP:
|
SNP ID:
sf1000701961(Gbrowse)
Chromosome: chr10 Position: 701961 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1349 | 89.62% | 10.38% |
| All Indica | 730 | 81.23% | 18.77% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 338 | 73.96% | 26.04% |
| Indica II | 203 | 90.64% | 9.36% |
| Indica Intermediate | 189 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000701961 | A->G | LOC_Os10g02120(LOC_Os10g02120.1) | INTRON |