Detailed information of SNP:
|
SNP ID:
sf1000702155(Gbrowse)
Chromosome: chr10 Position: 702155 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.39% | 26.61% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 27.77% | 72.23% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000702155 | A->C | LOC_Os10g02120(LOC_Os10g02120.1) | INTRON |