Detailed information of SNP:
|
SNP ID:
sf1000705407(Gbrowse)
Chromosome: chr10 Position: 705407 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.61% | 37.39% |
| All Indica | 796 | 56.41% | 43.59% |
| All Japonica | 496 | 72.78% | 27.22% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 373 | 57.37% | 42.63% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000705407 | T->A | INTERGENIC | None |