Detailed information of SNP:
|
SNP ID:
sf1000712840(Gbrowse)
Chromosome: chr10 Position: 712840 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.99% | 38.01% |
| All Indica | 799 | 51.69% | 48.31% |
| All Japonica | 497 | 72.43% | 27.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 53.60% | 46.40% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000712840 | C->T | INTERGENIC | None |