Detailed information of SNP:
|
SNP ID:
sf1000729944(Gbrowse)
Chromosome: chr10 Position: 729944 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 93.98% | 6.02% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 442 | 82.81% | 17.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 79.00% | 21.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000729944 | C->T | INTERGENIC | None |