Detailed information of SNP:
|
SNP ID:
sf1000733134(Gbrowse)
Chromosome: chr10 Position: 733134 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 95.34% | 4.66% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 44 | 90.91% | 9.09% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000733134 | T->C | LOC_Os10g02150(LOC_Os10g02150.1) | Non-Synonymous SNP |