Detailed information of SNP:
|
SNP ID:
sf1000735264(Gbrowse)
Chromosome: chr10 Position: 735264 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 89.75% | 10.25% |
| All Indica | 796 | 94.85% | 5.15% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000735264 | C->T | INTERGENIC | None |