Detailed information of SNP:
|
SNP ID:
sf1000737507(Gbrowse)
Chromosome: chr10 Position: 737507 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 71.42% | 28.58% |
| All Indica | 768 | 95.05% | 4.95% |
| All Japonica | 477 | 29.98% | 70.02% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 358 | 94.69% | 5.31% |
| Indica II | 202 | 92.57% | 7.43% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 332 | 17.77% | 82.23% |
| Tropical Japonica | 80 | 66.25% | 33.75% |
| Japonica Intermediate | 65 | 47.69% | 52.31% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000737507 | A->T | LOC_Os10g02160(LOC_Os10g02160.1) | INTRON |