Detailed information of SNP:
|
SNP ID:
sf1000737835(Gbrowse)
Chromosome: chr10 Position: 737835 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 67.18% | 32.82% |
| All Indica | 761 | 93.43% | 6.57% |
| All Japonica | 480 | 20.21% | 79.79% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 349 | 92.84% | 7.16% |
| Indica II | 204 | 89.71% | 10.29% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 333 | 16.22% | 83.78% |
| Tropical Japonica | 84 | 33.33% | 66.67% |
| Japonica Intermediate | 63 | 23.81% | 76.19% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000737835 | T->C | LOC_Os10g02160(LOC_Os10g02160.1) | Synonymous |