Detailed information of SNP:
|
SNP ID:
sf1000737976(Gbrowse)
Chromosome: chr10 Position: 737976 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 89.04% | 10.96% |
| All Indica | 792 | 93.69% | 6.31% |
| All Japonica | 482 | 80.29% | 19.71% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 330 | 91.52% | 8.48% |
| Tropical Japonica | 88 | 43.18% | 56.82% |
| Japonica Intermediate | 64 | 73.44% | 26.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000737976 | G->A | LOC_Os10g02160(LOC_Os10g02160.1) | Synonymous |