Detailed information of SNP:
|
SNP ID:
sf1000739385(Gbrowse)
Chromosome: chr10 Position: 739385 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 51.02% | 48.98% |
| All Indica | 765 | 33.86% | 66.14% |
| All Japonica | 490 | 85.51% | 14.49% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 361 | 34.63% | 65.37% |
| Indica II | 198 | 47.98% | 52.02% |
| Indica Intermediate | 206 | 18.93% | 81.07% |
| Temperate Japonica | 334 | 85.33% | 14.67% |
| Tropical Japonica | 90 | 87.78% | 12.22% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000739385 | T->C | LOC_Os10g02170(LOC_Os10g02170.1) | Non-Synonymous SNP |