Detailed information of SNP:



SNP ID: sf1000739385(Gbrowse)

Chromosome: chr10

Position: 739385
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1376 51.02% 48.98%
All Indica765 33.86% 66.14%
All Japonica490 85.51% 14.49%
Aus67 2.99% 97.01%
Indica I361 34.63% 65.37%
Indica II198 47.98% 52.02%
Indica Intermediate206 18.93% 81.07%
Temperate Japonica334 85.33% 14.67%
Tropical Japonica90 87.78% 12.22%
Japonica Intermediate66 83.33% 16.67%
Group VI/Aromatic14 35.71% 64.29%
Intermediate40 42.50% 57.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000739385 T->C LOC_Os10g02170(LOC_Os10g02170.1) Non-Synonymous SNP