Detailed information of SNP:
SNP ID:
sf1000739385(Gbrowse)
Chromosome: chr10 Position: 739385 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1376 | 51.02% | 48.98% |
All Indica | 765 | 33.86% | 66.14% |
All Japonica | 490 | 85.51% | 14.49% |
Aus | 67 | 2.99% | 97.01% |
Indica I | 361 | 34.63% | 65.37% |
Indica II | 198 | 47.98% | 52.02% |
Indica Intermediate | 206 | 18.93% | 81.07% |
Temperate Japonica | 334 | 85.33% | 14.67% |
Tropical Japonica | 90 | 87.78% | 12.22% |
Japonica Intermediate | 66 | 83.33% | 16.67% |
Group VI/Aromatic | 14 | 35.71% | 64.29% |
Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1000739385 | T->C | LOC_Os10g02170(LOC_Os10g02170.1) | Non-Synonymous SNP |