Detailed information of SNP:
|
SNP ID:
sf1000743771(Gbrowse)
Chromosome: chr10 Position: 743771 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1226 | 59.22% | 40.78% |
| All Indica | 739 | 76.18% | 23.82% |
| All Japonica | 366 | 29.51% | 70.49% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 351 | 86.89% | 13.11% |
| Indica II | 192 | 74.48% | 25.52% |
| Indica Intermediate | 196 | 58.67% | 41.33% |
| Temperate Japonica | 242 | 11.16% | 88.84% |
| Tropical Japonica | 74 | 75.68% | 24.32% |
| Japonica Intermediate | 50 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000743771 | G->A | INTERGENIC | None |