Detailed information of SNP:
|
SNP ID:
sf1000753123(Gbrowse)
Chromosome: chr10 Position: 753123 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 58.21% | 41.79% |
| All Indica | 766 | 43.73% | 56.27% |
| All Japonica | 491 | 88.80% | 11.20% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 363 | 42.70% | 57.30% |
| Indica II | 203 | 64.53% | 35.47% |
| Indica Intermediate | 200 | 24.50% | 75.50% |
| Temperate Japonica | 334 | 86.23% | 13.77% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000753123 | A->G | INTERGENIC | None |