Detailed information of SNP:



SNP ID: sf1000753123(Gbrowse)

Chromosome: chr10

Position: 753123
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1376 58.21% 41.79%
All Indica766 43.73% 56.27%
All Japonica491 88.80% 11.20%
Aus66 9.09% 90.91%
Indica I363 42.70% 57.30%
Indica II203 64.53% 35.47%
Indica Intermediate200 24.50% 75.50%
Temperate Japonica334 86.23% 13.77%
Tropical Japonica90 97.78% 2.22%
Japonica Intermediate67 89.55% 10.45%
Group VI/Aromatic14 35.71% 64.29%
Intermediate39 48.72% 51.28%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000753123 A->G INTERGENIC None