Detailed information of SNP:
|
SNP ID:
sf1000753582(Gbrowse)
Chromosome: chr10 Position: 753582 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 56.63% | 43.37% |
| All Indica | 767 | 75.88% | 24.12% |
| All Japonica | 475 | 19.37% | 80.63% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 362 | 73.48% | 26.52% |
| Indica II | 198 | 66.16% | 33.84% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 331 | 14.20% | 85.80% |
| Tropical Japonica | 79 | 36.71% | 63.29% |
| Japonica Intermediate | 65 | 24.62% | 75.38% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000753582 | A->G | LOC_Os10g02200(LOC_Os10g02200.1) | Non-Synonymous SNP |