Detailed information of SNP:
|
SNP ID:
sf1000760151(Gbrowse)
Chromosome: chr10 Position: 760151 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.84% | 36.16% |
| All Indica | 794 | 54.28% | 45.72% |
| All Japonica | 496 | 72.98% | 27.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 56.87% | 43.13% |
| Indica II | 212 | 32.55% | 67.45% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 334 | 94.61% | 5.39% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000760151 | C->T | INTERGENIC | None |