Detailed information of SNP:
SNP ID:
sf1000760151(Gbrowse)
Chromosome: chr10 Position: 760151 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1413 | 63.84% | 36.16% |
All Indica | 794 | 54.28% | 45.72% |
All Japonica | 496 | 72.98% | 27.02% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 371 | 56.87% | 43.13% |
Indica II | 212 | 32.55% | 67.45% |
Indica Intermediate | 211 | 71.56% | 28.44% |
Temperate Japonica | 334 | 94.61% | 5.39% |
Tropical Japonica | 94 | 12.77% | 87.23% |
Japonica Intermediate | 68 | 50.00% | 50.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1000760151 | C->T | INTERGENIC | None |