Detailed information of SNP:



SNP ID: sf1000769003(Gbrowse)

Chromosome: chr10

Position: 769003
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 90.67% 9.33%
All Indica799 100.00% 0.00%
All Japonica494 79.15% 20.85%
Aus67 58.21% 41.79%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica332 74.40% 25.60%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 77.94% 22.06%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000769003 G->A INTERGENIC None