Detailed information of SNP:
|
SNP ID:
sf1000802041(Gbrowse)
Chromosome: chr10 Position: 802041 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 74.61% | 25.39% |
| All Indica | 797 | 61.61% | 38.39% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 373 | 53.89% | 46.11% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000802041 | G->A | INTERGENIC | None |