Detailed information of SNP:
|
SNP ID:
sf1000803135(Gbrowse)
Chromosome: chr10 Position: 803135 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.57% | 39.43% |
| All Indica | 796 | 39.32% | 60.68% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 37.97% | 62.03% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 210 | 19.05% | 80.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000803135 | T->C | INTERGENIC | None |