Detailed information of SNP:
|
SNP ID:
sf1000820060(Gbrowse)
Chromosome: chr10 Position: 820060 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 95.20% | 4.80% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 83.58% | 16.42% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000820060 | A->G | LOC_Os10g02284(LOC_Os10g02284.1) | Non-Synonymous SNP |