Detailed information of SNP:
|
SNP ID:
sf1000820407(Gbrowse)
Chromosome: chr10 Position: 820407 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 86.39% | 13.61% |
| All Indica | 796 | 95.60% | 4.40% |
| All Japonica | 494 | 71.46% | 28.54% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 64.78% | 35.22% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000820407 | A->G | LOC_Os10g02284(LOC_Os10g02284.1) | Synonymous |