Detailed information of SNP:
|
SNP ID:
sf1000829740(Gbrowse)
Chromosome: chr10 Position: 829740 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 68.87% | 31.13% |
| All Indica | 763 | 92.79% | 7.21% |
| All Japonica | 476 | 25.42% | 74.58% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 360 | 90.56% | 9.44% |
| Indica II | 199 | 94.97% | 5.03% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 322 | 5.90% | 94.10% |
| Tropical Japonica | 87 | 79.31% | 20.69% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000829740 | A->G | LOC_Os10g02314(LOC_Os10g02314.1) | INTRON |