Detailed information of SNP:
|
SNP ID:
sf1000838281(Gbrowse)
Chromosome: chr10 Position: 838281 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.24% | 31.76% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 495 | 28.48% | 71.52% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 333 | 5.71% | 94.29% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000838281 | T->C | INTERGENIC | None |