Detailed information of SNP:
|
SNP ID:
sf1000842333(Gbrowse)
Chromosome: chr10 Position: 842333 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 82.27% | 17.73% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 441 | 46.49% | 53.51% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 282 | 25.53% | 74.47% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000842333 | G->T | LOC_Os10g02350(LOC_Os10g02350.1) | INTRON |