Detailed information of SNP:
|
SNP ID:
sf1000859614(Gbrowse)
Chromosome: chr10 Position: 859614 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 85.47% | 14.53% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 475 | 58.32% | 41.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 318 | 44.34% | 55.66% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000859614 | C->G | INTERGENIC | None |