Detailed information of SNP:
|
SNP ID:
sf1000867614(Gbrowse)
Chromosome: chr10 Position: 867614 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 76.87% | 23.13% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 495 | 39.60% | 60.40% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 21.32% | 78.68% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000867614 | T->C | LOC_Os10g02380(LOC_Os10g02380.1) | INTRON |