Detailed information of SNP:
|
SNP ID:
sf1000867671(Gbrowse)
Chromosome: chr10 Position: 867671 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 89.26% | 10.74% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 410 | 66.10% | 33.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 259 | 52.12% | 47.88% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 58 | 82.76% | 17.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000867671 | A->G | LOC_Os10g02380(LOC_Os10g02380.1) | INTRON |