Detailed information of SNP:
|
SNP ID:
sf1000902061(Gbrowse)
Chromosome: chr10 Position: 902061 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 97.50% | 2.50% |
| All Indica | 787 | 95.55% | 4.45% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 207 | 86.96% | 13.04% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000902061 | C->T | INTERGENIC | None |