Detailed information of SNP:
|
SNP ID:
sf1000903637(Gbrowse)
Chromosome: chr10 Position: 903637 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 74.77% | 25.23% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 486 | 29.63% | 70.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 33.23% | 66.77% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000903637 | A->G | LOC_Os10g02470(LOC_Os10g02470.1) | INTRON |