Detailed information of SNP:
|
SNP ID:
sf1000921497(Gbrowse)
Chromosome: chr10 Position: 921497 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 62.23% | 37.77% |
| All Indica | 794 | 96.98% | 3.02% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000921497 | C->T | INTERGENIC | None |