Detailed information of SNP:



SNP ID: sf1000932047(Gbrowse)

Chromosome: chr10

Position: 932047
Major allele: A

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1419 63.78% 36.22%
All Indica799 99.50% 0.50%
All Japonica497 3.82% 96.18%
Aus67 97.01% 2.99%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica94 5.32% 94.68%
Japonica Intermediate68 14.71% 85.29%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000932047 T->A INTERGENIC None