Detailed information of SNP:
SNP ID:
sf1000932047(Gbrowse)
Chromosome: chr10 Position: 932047 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 63.78% | 36.22% |
All Indica | 799 | 99.50% | 0.50% |
All Japonica | 497 | 3.82% | 96.18% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 1.19% | 98.81% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 68 | 14.71% | 85.29% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1000932047 | T->A | INTERGENIC | None |