Detailed information of SNP:



SNP ID: sf1000935686(Gbrowse)

Chromosome: chr10

Position: 935686
Major allele: T

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1418 63.54% 36.46%
All Indica798 99.25% 0.75%
All Japonica497 3.82% 96.18%
Aus67 97.01% 2.99%
Indica I375 99.73% 0.27%
Indica II213 98.59% 1.41%
Indica Intermediate210 99.05% 0.95%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica94 5.32% 94.68%
Japonica Intermediate68 14.71% 85.29%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000935686 G->T INTERGENIC None