Detailed information of SNP:
SNP ID:
sf1000935686(Gbrowse)
Chromosome: chr10 Position: 935686 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 63.54% | 36.46% |
All Indica | 798 | 99.25% | 0.75% |
All Japonica | 497 | 3.82% | 96.18% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 210 | 99.05% | 0.95% |
Temperate Japonica | 335 | 1.19% | 98.81% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 68 | 14.71% | 85.29% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1000935686 | G->T | INTERGENIC | None |