Detailed information of SNP:
|
SNP ID:
sf1000941353(Gbrowse)
Chromosome: chr10 Position: 941353 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 93.80% | 6.20% |
| All Indica | 762 | 90.16% | 9.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 57 | 87.72% | 12.28% |
| Indica I | 358 | 92.74% | 7.26% |
| Indica II | 206 | 88.83% | 11.17% |
| Indica Intermediate | 198 | 86.87% | 13.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000941353 | G->T | INTERGENIC | None |