Detailed information of SNP:
|
SNP ID:
sf1000959914(Gbrowse)
Chromosome: chr10 Position: 959914 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 92.34% | 7.66% |
| All Indica | 742 | 87.06% | 12.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 345 | 87.54% | 12.46% |
| Indica II | 202 | 85.64% | 14.36% |
| Indica Intermediate | 195 | 87.69% | 12.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000959914 | C->T | LOC_Os10g02544(LOC_Os10g02544.1) | Synonymous |