Detailed information of SNP:
|
SNP ID:
sf1000960108(Gbrowse)
Chromosome: chr10 Position: 960108 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 81.84% | 18.16% |
| All Indica | 764 | 68.46% | 31.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 364 | 94.51% | 5.49% |
| Indica II | 197 | 32.49% | 67.51% |
| Indica Intermediate | 203 | 56.65% | 43.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000960108 | A->G | LOC_Os10g02544(LOC_Os10g02544.1) | INTRON |