Detailed information of SNP:
|
SNP ID:
sf1000965643(Gbrowse)
Chromosome: chr10 Position: 965643 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 56.80% | 43.20% |
| All Indica | 793 | 89.53% | 10.47% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 87.90% | 12.10% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000965643 | G->A | LOC_Os10g02560(LOC_Os10g02560.1) | Synonymous |